PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_012990_hiap.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 456aa    MW: 50064.5 Da    PI: 6.3605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_012990_hiap.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058186208123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+k+Fs+   L  H  +H
  Bv1_012990_hiap.t1 186 YECKTCSKTFSSFQALGGHRASH 208
                         99**********99999998887 PP
2zf-C2H212.60.00041310332123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Bv1_012990_hiap.t1 310 HECSICGAEFTSGQALGGHMRRH 332
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-12185210IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7185208No hitNo description
SMARTSM003550.075186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-7305332No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4308334IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.2E-13309334IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658310337IPR007087Zinc finger, C2H2
SMARTSM003550.01310332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280312332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MDGQDEVINH NNNNNNNNDD DDNCNDNNNI GGGGQSIVKG KRTKRQRPHS PIPFRMITNS  60
NTNITTTNSY KSDEGSDICS NNNVVEDNMT PTTTTIASEE DDVYYRGGRT TTASTTEEEE  120
DMANCLILLA QGHSRDLQPP PQPLLSLMKD GSAGNNNNNN NVNNKFVSRK FMETPSTTGK  180
SGYYVYECKT CSKTFSSFQA LGGHRASHKK PKNKDEDYSN TNKSRSSNIF QSIIPSTNTN  240
TNTNRPNYNN NSHLMHSSDD EDPPFKMARH VNNNNSHHIS SSTSLSLQLT NRALYNGITN  300
HQSSNKGRVH ECSICGAEFT SGQALGGHMR RHRGPVTTGA GTATSPIIAA VPLAIEQAPT  360
ANEISDQDMM INSMKMAHVR NNTTTNVLSL DLDLNLPAPA DENAGDHQRE SKFVFESKQP  420
SNDQQPSSPP PPPPPEPQQQ QQQLVFSSPA LVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684077.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0K9Q9V41e-152A0A0K9Q9V4_SPIOL; Uncharacterized protein
STRINGXP_010684077.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.18e-30C2H2 family protein