PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_014170_yzgr.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 444aa MW: 49474.4 Da PI: 6.5101

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_014170_yzgr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.6	1.8e-47	31	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeel+++yL+ kv +++++++ i evd++++ePwdLp ++k +e+ewy +s rd+ky++g r+nrat Bv1_014170_yzgr.t1 31 LPPGFRFHPTDEELITFYLASKVFNTTITTSVpnnlflsdyysgvQIVEVDLTRCEPWDLPDRAKMGEREWYLYSLRDRKYPSGLRTNRAT 121 79***********************7774477888899999955***********999999******************** PP NAM 79 ksgyWkatgkdkevlsk..kgel.........................vglkktLvfykgrapkgektdWvmheyrl 128 ++gyWkatgkd++v+++ + +g+kktLvfy+grap+g kt+Wvmheyrl Bv1_014170_yzgr.t1 122 ETGYWKATGKDRQVYASggI--TttnntttagggggggggggggggmlIGMKKTLVFYQGRAPRGIKTRWVMHEYRL 196 ************9550..34555667788888888888888888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-54	30	137	IPR003441	NAC domain
PROSITE profile	PS51005	51.447	31	219	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	32	196	IPR003441	NAC domain
SuperFamily	SSF101941	6.41E-54	164	220	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MWRMEDVIRE LKEEGILEDG IIGKCEKRGG LPPGFRFHPT DEELITFYLA SKVFNTTITT 60 SVPNNLFLSD YYSGVQIVEV DLTRCEPWDL PDRAKMGERE WYLYSLRDRK YPSGLRTNRA 120 TETGYWKATG KDRQVYASGG ITTTNNTTTA GGGGGGGGGG GGGGGMLIGM KKTLVFYQGR 180 APRGIKTRWV MHEYRLDGHF SSFRLSSKEE WVICRIFHKN GEKKSPPIIH PPPPSASPPP 240 FSPFLNNLPP LREPSTTSTT PVVENTPSQT PHYANHNLLH SLLLDPLPNF SSISGSDTIF 300 PHHTTTTTSF DFGWLQPKHK QLSTATTAAA TVTKQLQQQQ WLHKICPQSQ SRYFQHQYYD 360 PLNFDHMYLP NSYTTTTTST TVAPVANDGD EDDIDVDEAE AEAEAEAAVH IDMSPSLAVA 420 ALDRMLNHNP INHPVESWSV HILP

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MWRMEDVIRE LKEEGILEDG IIGKCEKRGG LPPGFRFHPT DEELITFYLA SKVFNTTITT  60
SVPNNLFLSD YYSGVQIVEV DLTRCEPWDL PDRAKMGERE WYLYSLRDRK YPSGLRTNRA  120
TETGYWKATG KDRQVYASGG ITTTNNTTTA GGGGGGGGGG GGGGGMLIGM KKTLVFYQGR  180
APRGIKTRWV MHEYRLDGHF SSFRLSSKEE WVICRIFHKN GEKKSPPIIH PPPPSASPPP  240
FSPFLNNLPP LREPSTTSTT PVVENTPSQT PHYANHNLLH SLLLDPLPNF SSISGSDTIF  300
PHHTTTTTSF DFGWLQPKHK QLSTATTAAA TVTKQLQQQQ WLHKICPQSQ SRYFQHQYYD  360
PLNFDHMYLP NSYTTTTTST TVAPVANDGD EDDIDVDEAE AEAEAEAAVH IDMSPSLAVA  420
ALDRMLNHNP INHPVESWSV HILP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-43	31	222	15	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019105334.1	0.0	PREDICTED: NAC domain-containing protein 79
Swissprot	Q9S851	7e-80	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A0K9QIE0	1e-136	A0A0K9QIE0_SPIOL; Uncharacterized protein
STRING	XP_010686786.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	6e-75	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]