PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_015770_ojha.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 213aa    MW: 23607.6 Da    PI: 10.5523
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_015770_ojha.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-21105164357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Bv1_015770_ojha.t1 105 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEQLskygKIEGKNVFYWFQNHKARERQ 164
                         7*****************99**************************************97 PP
2Wus_type_Homeobox119.31.7e-38105166465
   Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqkq
  Bv1_015770_ojha.t1 105 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEQLSKYGKIEGKNVFYWFQNHKARERQKQ 166
                         8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.495100165IPR001356Homeobox domain
SuperFamilySSF466891.11E-12100170IPR009057Homeodomain-like
SMARTSM003899.0E-7102169IPR001356Homeobox domain
CDDcd000861.05E-5105166No hitNo description
PfamPF000462.9E-19105164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-8106164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGGSSMKVHP FGRGFWDNHQ TTAHDSQALT LGCKRFRPLA PKVGSNNNVV NNTTTSTGHH  60
NNNATFDLKS FIRPHCGPPK MVSPPDHKKD SASHQAETLS HPGGTRWNPT QEQIGILEML  120
YRGGMRTPNA QQIEQITEQL SKYGKIEGKN VFYWFQNHKA RERQKQKRTI LGLSHNPRTP  180
TAATATATAT TQLNASTTLT LDTRVGIFIC FGC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688717.11e-153PREDICTED: WUSCHEL-related homeobox 4 isoform X1
SwissprotQ6X7J96e-63WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0K9R3U01e-86A0A0K9R3U0_SPIOL; Uncharacterized protein
STRINGXP_010688717.11e-152(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-62WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]