PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_015900_ycdz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 288aa    MW: 31209.9 Da    PI: 9.4113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_015900_ycdz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08180220954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Bv1_015900_ycdz.t1 180 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6181220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-6194225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDIDLLKSTP DDQIEMMLMT MHMDKTASDT SGGSFIDTAM MSFSCAAAGG GGSGSGSLPQ  60
HFNAQDHIPN SPTMLSPQTT ISFSNNNNNN NNNNNNNNIP STLLSSSFAS YSNNNSIDNA  120
SSFPASGTSS SSQKQTSMAA MREMIFRIAA MQPIYIDPEA VKPPKRRNVR ISKDPQSVAA  180
RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AINRPPIPPA  240
SAGLGFPVAM SSSSGYFPVT SHKPSNYSLA VQPHMNASHH NVQQFSDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688854.10.0PREDICTED: transcription factor HEC1
TrEMBLA0A0K9QE731e-92A0A0K9QE73_SPIOL; Uncharacterized protein
STRINGXP_010688854.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-42bHLH family protein