PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_018210_djqs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 308aa    MW: 34225 Da    PI: 5.7837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_018210_djqs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18108157356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++ge
  Bv1_018210_djqs.t1 108 YRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKGE 157
                         9****888.**********854...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-36107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.986107164IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21107165IPR016177DNA-binding domain
PRINTSPR003671.7E-10108119IPR001471AP2/ERF domain
CDDcd000181.15E-32108166No hitNo description
Gene3DG3DSA:3.30.730.109.2E-32108165IPR001471AP2/ERF domain
PfamPF008471.6E-12108157IPR001471AP2/ERF domain
PRINTSPR003671.7E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEPLHIPNET HLDHIFFQSY STSSSINSTT TTNSTSASTS SSYVSSNPFS GFDKKLNVKN  60
GPKRARLDPK EENEAPKKKR SNDDADDNNN TNSNNNNNDD GRDGHLMYRG VRKRSWGKWV  120
SEIREPKKKS RIWLGTYPTA EMAARAHDVA ALAIKGENAF LNFPELAHLL PQPLSTSPKD  180
IQAAAAKAAE AEPSRCQTSS SSSCNSTNTS SSSEVNSVEW SDSVGSTRGH HHEHDHGDEH  240
HGHNDDDDES LFDLPDLVVD VKTQRVGGYY SHSTWQITQG EAMIFGLDDD DQHQHSCLWM  300
GLEVNREF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-17108164360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-161051641272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396493e-37AC239649.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-202l21 map 1, complete sequence.
GenBankHG9754403e-37HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-37HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692104.10.0PREDICTED: ethylene-responsive transcription factor ERF035
SwissprotQ8LBQ73e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9RV347e-73A0A0K9RV34_SPIOL; Uncharacterized protein
STRINGXP_010692104.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]