PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_018470_kcda.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 495aa MW: 54292.3 Da PI: 7.8631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_018470_kcda.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.3e-15	290	336	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Bv1_018470_kcda.t2 290 VHNQSERKRRDKINQRMKTLQKLVPNS-----NKADKASMLDEVIEYLKQLQ 336 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-19	284	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.396	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-18	290	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-13	290	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.98E-17	291	340	No hit	No description
SMART	SM00353	1.6E-17	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MNHHHCVPTW TNNLEDEIPP PPPPPSYPPL SRVLPSQSIS TSLSVGPDSS MLDYEMAELT 60 WENGQLAMHG LGLPRVSSKS NLADAVAWTD KLYTRASGTL ESIVDQAYHN QEPSPMAARR 120 GAWKHDEDDV VPWFGPKTTA PVPVTLDALV PSNNMVGCST RVESCSTAAR VPLGSDWSVS 180 VSASASASES TRKKGHAEDT CEQLRSMNNN NGFTSTSFGQ VSPENTKTFT VDEHDSACHS 240 RPQLSSSLKS KKSHPISRKK KRERGEEEEN QKQGTEKSGV STKRSRAAAV HNQSERKRRD 300 KINQRMKTLQ KLVPNSNKAD KASMLDEVIE YLKQLQAQVQ MLSRMSLPSM MMPLAIQHQL 360 QMSMMAPMGM GMGMGMGMGM DQMNMSMNPM GHPNMAGMNP ALMNLAAAYN MPPLAPTSDG 420 AASRGGGDCI LPQGNMVQTD PLSTYLACQS LPMTMDAYSR MTAIYQQLQQ QQTQQQQQQQ 480 QQRLNQQQAG PSSNI

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MNHHHCVPTW TNNLEDEIPP PPPPPSYPPL SRVLPSQSIS TSLSVGPDSS MLDYEMAELT  60
WENGQLAMHG LGLPRVSSKS NLADAVAWTD KLYTRASGTL ESIVDQAYHN QEPSPMAARR  120
GAWKHDEDDV VPWFGPKTTA PVPVTLDALV PSNNMVGCST RVESCSTAAR VPLGSDWSVS  180
VSASASASES TRKKGHAEDT CEQLRSMNNN NGFTSTSFGQ VSPENTKTFT VDEHDSACHS  240
RPQLSSSLKS KKSHPISRKK KRERGEEEEN QKQGTEKSGV STKRSRAAAV HNQSERKRRD  300
KINQRMKTLQ KLVPNSNKAD KASMLDEVIE YLKQLQAQVQ MLSRMSLPSM MMPLAIQHQL  360
QMSMMAPMGM GMGMGMGMGM DQMNMSMNPM GHPNMAGMNP ALMNLAAAYN MPPLAPTSDG  420
AASRGGGDCI LPQGNMVQTD PLSTYLACQS LPMTMDAYSR MTAIYQQLQQ QQTQQQQQQQ  480
QQRLNQQQAG PSSNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	299	ERKRRD
2	295	300	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019107728.1	0.0	PREDICTED: transcription factor UNE10
Swissprot	Q8GZ38	6e-72	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A0K9RMR6	1e-164	A0A0K9RMR6_SPIOL; Uncharacterized protein
STRING	XP_010692152.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]