PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_019320_yckc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 245aa    MW: 26776.2 Da    PI: 7.0614
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_019320_yckc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.87.5e-38301301100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r d++ +l+yeA  r+rdP+yG+v++i++lqqq++++
  Bv1_019320_yckc.t1  30 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDTVVTLCYEALSRVRDPIYGCVAHIFTLQQQVMSM 120
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela ++++
  Bv1_019320_yckc.t1 121 QAELAFVHAR 130
                         *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.22429131IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3630128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSNHHQQNNQ QEWQGGGGSS NNSNNIGGGP CGACKYLRRK CVKGCVFAPY FDSEQGTAHF  60
AAVHKVFGAS NASKLLLRIP AHRRLDTVVT LCYEALSRVR DPIYGCVAHI FTLQQQVMSM  120
QAELAFVHAR LSTLQRLPPT FPTVDQTNPH CCVDQMAATP ATTNTNGTVA PCMPSFDNNA  180
FLSQPSLSSL AASAPATASE LASFCNLTDY HQHDDMIIED DDLQTLTREF VSKYLPGVKF  240
KSEPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-36271448129LOB family transfactor Ramosa2.1
5ly0_B2e-36271448129LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.10.0PREDICTED: LOB domain-containing protein 19
SwissprotO813228e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0K9QWU81e-119A0A0K9QWU8_SPIOL; Uncharacterized protein
STRINGXP_010692268.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.17e-62LOB domain-containing protein 19