PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_020020_dmnk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 451aa    MW: 49792.4 Da    PI: 7.3397
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_020020_dmnk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.9e-07123145326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         t++C ++++   C +G  CkF H+
  Bv1_020020_dmnk.t1 123 TKICEHWMK-NSCVHGKDCKFLHS 145
                         789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0652450IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-42549IPR000571Zinc finger, CCCH-type
SMARTSM003560.29120146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549120147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4123144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.3E-46145440IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.7E-7151190IPR001680WD40 repeat
SuperFamilySSF509782.16E-49153442IPR017986WD40-repeat-containing domain
PfamPF004007.6E-7157190IPR001680WD40 repeat
PROSITE profilePS5029427.368158407IPR017986WD40-repeat-containing domain
PROSITE profilePS5008215.154158199IPR001680WD40 repeat
PRINTSPR003208.1E-8177191IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780177191IPR019775WD40 repeat, conserved site
SMARTSM003204230267IPR001680WD40 repeat
SMARTSM003203.5E-4274311IPR001680WD40 repeat
PfamPF004007.4E-4278311IPR001680WD40 repeat
PROSITE profilePS5008214.318281320IPR001680WD40 repeat
PRINTSPR003208.1E-8298312IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780298312IPR019775WD40 repeat, conserved site
SMARTSM003200.0061314351IPR001680WD40 repeat
PfamPF004000.076316350IPR001680WD40 repeat
PRINTSPR003208.1E-8338352IPR020472G-protein beta WD-40 repeat
SMARTSM0032013355398IPR001680WD40 repeat
SMARTSM0032024401438IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MTETITRRVV QQHHRGSFGW NRRPSPSKVC KFWLAGNCRK NPCRFAHTDV TAPVNRVLRL  60
NRSSFRESHD PKKEENIRER KQNLSLKKKN EVKECHPEEC EEKVTPCASA DATTGDVDKS  120
QCTKICEHWM KNSCVHGKDC KFLHSWCYGD GITMVAQLEG HNKAVTGITL PADSDKLFSG  180
SKDGTVRVWN CHTGECIGVA DVGSPVESLI SEGPWVLAGL LNSVKVWNIQ SNAEFTLSAS  240
AGQVYTMVAA NGMLFAGAQD GSILVWKFNA ETSSFDSVSP LKGHMGAVVS LIYGANRLYS  300
GSMDNTIRVW DLETMQCIHT LAKHSEVVMS VLCWEQYLIS SSLDRTLKVW AATEAGELEV  360
TYEHNEEHGI LSLRGMHDAA NKPIMLCSGN DNTVRLYELP SFVERGRIFS KQEVRGIHVG  420
PAGLFFTGDG TGLVSVWRCS SDSTASSDKA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-261324017323Tako8
6g6n_A3e-261324017323Tako8
6g6n_B3e-261324017323Tako8
6g6n_C3e-261324017323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107736.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
TrEMBLA0A0J7YN541e-155A0A0J7YN54_BETVU; Uncharacterized protein (Fragment)
TrEMBLA0A2I4DTE61e-154A0A2I4DTE6_JUGRE; zinc finger CCCH domain-containing protein 48-like isoform X2
STRINGXP_010692356.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-147zinc finger WD40 repeat protein 1