PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_021850_tdax.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 356aa MW: 39639.3 Da PI: 4.5152

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_021850_tdax.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	190	233	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Bv1_021850_tdax.t1 190 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 233 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.453	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-16	187	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-12	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	190	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-15	191	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-4	191	237	No hit	No description
CDD	cd04873	7.58E-4	282	323	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEMNEDGFLE ELLALRREAW ESTINPSSND HQINGFFSTT TWAFDGLDST LPNTSTTSYD 60 SFSSSIDQPP PITSTLDCSS FFIHPSSSSG PFSPHEPTFP GPGPGPDLGY SMSMMDADDD 120 DNNNNNNNNN DDNIISNNNN NMVSCKAEHS LSSGEIPSPT QLQPGFNIGL CMEKSKSKVK 180 RVEGQPSKNL MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM KELLERINKL 240 QEEVDLGSNQ LNLMSIFKDM KPNDVLVRNS PKFDVERRNV DTKVEICCAG KPGLLLSTVT 300 TLEAMGLEIQ QCVISCFNDF SLQASCDEEM EQKSLINSED IKQALFRNAG YGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEMNEDGFLE ELLALRREAW ESTINPSSND HQINGFFSTT TWAFDGLDST LPNTSTTSYD  60
SFSSSIDQPP PITSTLDCSS FFIHPSSSSG PFSPHEPTFP GPGPGPDLGY SMSMMDADDD  120
DNNNNNNNNN DDNIISNNNN NMVSCKAEHS LSSGEIPSPT QLQPGFNIGL CMEKSKSKVK  180
RVEGQPSKNL MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM KELLERINKL  240
QEEVDLGSNQ LNLMSIFKDM KPNDVLVRNS PKFDVERRNV DTKVEICCAG KPGLLLSTVT  300
TLEAMGLEIQ QCVISCFNDF SLQASCDEEM EQKSLINSED IKQALFRNAG YGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	199	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692682.1	0.0	PREDICTED: transcription factor bHLH93
Swissprot	Q9LSL1	3e-85	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0K9R735	1e-165	A0A0K9R735_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010692682.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-87	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]