PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_022010_satd.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 467aa MW: 50521.7 Da PI: 6.9864

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_022010_satd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	413	435	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f + C++G++C + H+ Bv1_022010_satd.t1 413 KPCMYFNTSKGCRHGANCVYQHD 435 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.084	410	437	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-4	413	436	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MQGSQKSKRV SWASDGNLCQ VRLFLSEECP SQVGASAQDQ LQAKKILSGL PVNGLVGDDN 60 LPPGFEGFNP SNQVKNRLAQ IPVVKWRSPP KFILDVEWQV VRGEESKEVE IQNRRELRVL 120 EAYYPRQSAI PPNPAVAPDV ECTIQDDKTL PSVPITPIEE EDLSGDPSPD NAASSAAISS 180 NLLSQGSYSS SQGFPANSNS RTFGVSPNSS SGISAAGVAS CGQEDALKAA LTAAAKSNEQ 240 IDHDLLVKIL SDPTIIGQLV RQQGSSMSMG SQPVLPKPLE GNIARPLSSG APVYKMDPPP 300 SQYNNAETGS SSSGMMSNGH LYPYLNGTGP MSMTHQQSVS LLSGVVPQVL SAQPPSHLKD 360 LNYYKNLIQQ HGGERHTDSQ HPFITHPIHH GGVVDQDVVD NSKPRDAKHK IMKPCMYFNT 420 SKGCRHGANC VYQHDMSAQQ RVTSISEMQS AKRMKMDREI RGSQSYI

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MQGSQKSKRV SWASDGNLCQ VRLFLSEECP SQVGASAQDQ LQAKKILSGL PVNGLVGDDN  60
LPPGFEGFNP SNQVKNRLAQ IPVVKWRSPP KFILDVEWQV VRGEESKEVE IQNRRELRVL  120
EAYYPRQSAI PPNPAVAPDV ECTIQDDKTL PSVPITPIEE EDLSGDPSPD NAASSAAISS  180
NLLSQGSYSS SQGFPANSNS RTFGVSPNSS SGISAAGVAS CGQEDALKAA LTAAAKSNEQ  240
IDHDLLVKIL SDPTIIGQLV RQQGSSMSMG SQPVLPKPLE GNIARPLSSG APVYKMDPPP  300
SQYNNAETGS SSSGMMSNGH LYPYLNGTGP MSMTHQQSVS LLSGVVPQVL SAQPPSHLKD  360
LNYYKNLIQQ HGGERHTDSQ HPFITHPIHH GGVVDQDVVD NSKPRDAKHK IMKPCMYFNT  420
SKGCRHGANC VYQHDMSAQQ RVTSISEMQS AKRMKMDREI RGSQSYI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692708.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6
TrEMBL	A0A0K9QTL1	0.0	A0A0K9QTL1_SPIOL; Uncharacterized protein
STRING	XP_010692708.1	0.0	(Beta vulgaris)