PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_022030_ueac.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 388aa    MW: 43840.2 Da    PI: 8.5195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_022030_ueac.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.81.9e-48151411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGf+F+Ptdeel+ +yLk+k+eg +  + +vi+e+di+k+ePwdLp k++ ++++ew++Fs+r kky++g++++rat+ gyWkatgk++
  Bv1_022030_ueac.t2  15 MFPGFKFSPTDEELILYYLKNKLEGYDKCV-QVIPELDICKYEPWDLPsKSIIKSDEEWFYFSPRGKKYPNGSQSKRATEIGYWKATGKER 104
                         579************************777.99***************777777899********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v+s ++ ++g+k+tLvf+ grapkge+t+W+mhey +
  Bv1_022030_ueac.t2 105 AVKS-GSIVIGTKRTLVFHIGRAPKGERTEWIMHEYCV 141
                         ***9.9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5511157IPR003441NAC domain
PROSITE profilePS5100552.22115157IPR003441NAC domain
PfamPF023658.9E-2417140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDGKEAERLI AASSMFPGFK FSPTDEELIL YYLKNKLEGY DKCVQVIPEL DICKYEPWDL  60
PSKSIIKSDE EWFYFSPRGK KYPNGSQSKR ATEIGYWKAT GKERAVKSGS IVIGTKRTLV  120
FHIGRAPKGE RTEWIMHEYC VSGKGQDALV VCRLRRKNDY YNSMNDGTNG HIQSSNPSLL  180
MATSGIYSGC DMDHLTSTSH KDRMAECSFK RTSSSNDSHS VEQMDSAFQS DLKTKDEIVQ  240
QQCASHQHFA NEDDLFAEIL NDSIVQLDEC LAPTPISTFG PVVTSTTIVP VIPRVPNTLH  300
LSVTPRVCPS QGTANRRIRL KRLRRCSSRK EQLEEGTGEN MVPSESKQVL RKDRMRLLKK  360
CCRLYIVLIT MALVILMLAH GISPAYYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-431415819169NAC domain-containing protein 19
3swm_B1e-431415819169NAC domain-containing protein 19
3swm_C1e-431415819169NAC domain-containing protein 19
3swm_D1e-431415819169NAC domain-containing protein 19
3swp_A1e-431415819169NAC domain-containing protein 19
3swp_B1e-431415819169NAC domain-containing protein 19
3swp_C1e-431415819169NAC domain-containing protein 19
3swp_D1e-431415819169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692710.10.0PREDICTED: NAC domain-containing protein 89 isoform X1
RefseqXP_019107794.10.0PREDICTED: NAC domain-containing protein 89 isoform X1
RefseqXP_019107795.10.0PREDICTED: NAC domain-containing protein 89 isoform X1
RefseqXP_019107796.10.0PREDICTED: NAC domain-containing protein 89 isoform X1
TrEMBLA0A0K9RI701e-176A0A0K9RI70_SPIOL; Uncharacterized protein
STRINGXP_010692710.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.14e-84NAC domain containing protein 89