PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_023100_yjrr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 232aa    MW: 26522.3 Da    PI: 8.0846
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_023100_yjrr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.82.5e-113773090
                FAR1 30 krtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                        ++ fvCs++gk++ +++               +++++++  +t+t C+a+++vk+++ g +ev+  +l Hn el+
  Bv1_023100_yjrr.t1  3 ENYFVCSCHGKPDGRSDFvsipdivvdedgseRKRKKQRVIVTKTRCNAMMRVKLNDFGMYEVIGHVLMHNYELT 77
                        567**********999889***********877777778889******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-8477IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKENYFVCSC HGKPDGRSDF VSIPDIVVDE DGSERKRKKQ RVIVTKTRCN AMMRVKLNDF  60
GMYEVIGHVL MHNYELTRTE WQHCHRSEMA IGDGKEKEIT VMTEASTRPA VQYRYECHQY  120
GGAEALGHTS RYHYNFSLLS LSQYLSLHSL FTFTSFVVSL PLSTSPSTHF RSIANHFFSP  180
SFPLSQFLFV LTLSLSCDLI VTRDFVRCIL RLSSLTTTPA IRIVFADDSP TP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438RKRKK
23440RKRKKQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102805.16e-81PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019105482.17e-81PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_019108191.19e-83PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0J8BF391e-173A0A0J8BF39_BETVU; Uncharacterized protein
STRINGXP_010665808.19e-80(Beta vulgaris)
STRINGXP_010694926.15e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-07FAR1-related sequence 5