PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_023440_jgxq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

LBD

Protein Properties

Length: 192aa MW: 21084.8 Da PI: 7.9198

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_023440_jgxq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.4e-40	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+l+r+C+++C++ap+f a++pkkfa vhk+FGasnv+k+l+++pee+red+++sl yeAear+rdPvyG++g i lq+++ ql+ Bv2_023440_jgxq.t1 12 SCAACKLLKRRCSPSCIFAPHFRADEPKKFAKVHKVFGASNVSKILNEVPEEHREDTVNSLSYEAEARLRDPVYGCIGAIVLLQRRMFQLQ 102 6**************************************************************************************** PP DUF260 92 aelallkee 100 ++lal++++ Bv2_023440_jgxq.t1 103 HDLALARAR 111 **99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MKGYNEPRSS SSCAACKLLK RRCSPSCIFA PHFRADEPKK FAKVHKVFGA SNVSKILNEV 60 PEEHREDTVN SLSYEAEARL RDPVYGCIGA IVLLQRRMFQ LQHDLALARA RLAHYKAGSV 120 RTNVTATATA TATATATSTD DNGLLGFDDH NINIIHMNLL NNGLISSDQF SQIDSGVYNT 180 TDFGQVSDLL PL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	7	132	6	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	7	132	6	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689397.1	1e-143	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	3e-58	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A0K9QQM5	1e-103	A0A0K9QQM5_SPIOL; Uncharacterized protein
STRING	XP_010689397.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-55	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]