PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_023470_huft.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 396aa    MW: 43440.1 Da    PI: 8.2051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_023470_huft.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1887136255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Bv2_023470_huft.t1  87 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 136
                         59****999.**********954...5*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-2087144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-2987144IPR001471AP2/ERF domain
PROSITE profilePS5103222.27387144IPR001471AP2/ERF domain
SMARTSM003804.3E-3987150IPR001471AP2/ERF domain
PfamPF008477.6E-1287132IPR001471AP2/ERF domain
CDDcd000185.12E-2087146No hitNo description
PRINTSPR003673.4E-108899IPR001471AP2/ERF domain
PRINTSPR003673.4E-10110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MQQHQIKFQQ HHQQHQQQQQ QQQRYHIIDS PTSNNTSSSS STTSNNSIST SSTTATTTNI  60
TTTTTTTNTT QNKRGRGKGG PDNNKFRYRG VRQRSWGKWV AEIREPRKRT RKWLGTFATA  120
EDAARAYDRA AIILYGSRAQ LNLQPSPPPS TTNGPTSASS SSRGSSSSSS GPTHSLRPIL  180
PKPTSGFGFS FSTFPYGGFG GGAGSTSSSS SVLQYPYHCP NIVHGPVQWA QSASSSMTSL  240
HLVHPNNSII NGSNSNNNNT TIGLNNTNSN DVNHQVLHPD QPMHSHEQVP EQQQQQQQHQ  300
LVHQQQVSSC YDHHQEDRHK SFCDEISSLV GSVDSGLSLG SQVIGHSDPG LINLPGSPLS  360
WPMPLSGELD EYHHSTTSLW DYGTDPFLFF ADDHQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1988143359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689445.21e-165PREDICTED: ethylene-responsive transcription factor ABI4
STRINGXP_010689445.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-27ERF family protein