PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_023500_uksi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 253aa    MW: 27921.3 Da    PI: 7.0118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_023500_uksi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181762147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+WT++Ed  l+++v q+G+++W++I++ ++ gR++k+c++rw + 
  Bv2_023500_uksi.t1 17 KGSWTPQEDATLIKLVDQHGPRNWTLISEGIP-GRSGKSCRLRWCNQ 62
                        799*****************************.***********985 PP
2Myb_DNA-binding55.41.4e-1771113347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++ Ede++++a+k +G++ W+ Ia+ ++ gRt++ +k++w++ 
  Bv2_023500_uksi.t1  71 PFSPSEDEIIIQAHKAHGNR-WAVIAKLLP-GRTDNAIKNHWNST 113
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4451267IPR017930Myb domain
SuperFamilySSF466898.61E-3114110IPR009057Homeodomain-like
SMARTSM007178.6E-161665IPR001005SANT/Myb domain
PfamPF002491.5E-181762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-251870IPR009057Homeodomain-like
CDDcd001671.73E-141961No hitNo description
PROSITE profilePS5129421.62368118IPR017930Myb domain
SMARTSM007172.1E-1668116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2471117IPR009057Homeodomain-like
PfamPF002491.4E-1571113IPR001005SANT/Myb domain
CDDcd001672.77E-1371114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGTQNESQNG VVKDRVKGSW TPQEDATLIK LVDQHGPRNW TLISEGIPGR SGKSCRLRWC  60
NQLSPDVQHR PFSPSEDEII IQAHKAHGNR WAVIAKLLPG RTDNAIKNHW NSTLRRKRAH  120
EVGTELGEWK RQRVDSVSSE SNSGVGVVLE QEVDGGVEGS EGVETLLTLL PPGKSVIVPG  180
GGEREGEDQV MKGVGKGEEK SDHMIRCTVG RQDTCWINLM QSMIAEEVKN YMDRLVLNGD  240
GIGPKSDSQA HHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-40161173104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-39411745158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-39411745158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-40161173104C-Myb DNA-Binding Domain
1msf_C5e-40161173104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666145.10.0PREDICTED: myb protein
TrEMBLA0A067LKB35e-81A0A067LKB3_JATCU; MYB family protein
STRINGXP_010666145.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-52myb domain protein r1