PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_023660_pmxz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 639aa    MW: 70241.4 Da    PI: 8.2912
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_023660_pmxz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08246266526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f + G Ck G+ C FaHg
  Bv2_023660_pmxz.t1 246 PCPEFKK-GSCKKGEECEFAHG 266
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.5E-1414145IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.97E-1419143IPR020683Ankyrin repeat-containing domain
PfamPF127961.9E-654128IPR020683Ankyrin repeat-containing domain
CDDcd002049.90E-1354142No hitNo description
SMARTSM002480.0195988IPR002110Ankyrin repeat
PROSITE profilePS5008810.2325991IPR002110Ankyrin repeat
PROSITE profilePS5029716.73359131IPR020683Ankyrin repeat-containing domain
SMARTSM00248196128IPR002110Ankyrin repeat
PROSITE profilePS500889.77896131IPR002110Ankyrin repeat
PROSITE profilePS5010312.981241268IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4245268IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5246266IPR000571Zinc finger, CCCH-type
SMARTSM0035684276299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822276300IPR000571Zinc finger, CCCH-type
PfamPF105772.4E-4386472IPR018890Uncharacterised protein family FAM171
SuperFamilySSF819955.49E-5399457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MGMDIIIQQQ PTSTSTLLEF AASDDVNSFK LALQSSGLSI DDVGFWYTRR IGSNKMGYEQ  60
RTPLMVAAQY GSVKVVDFII ESANSVDIIN RISGSDKVTA LHCAVAGGSV SSTSIVHRLI  120
SASANTNIVD ANGNRASDLI AMFPKLPLFK NNKQLDTLLK SESSDSDSIS GFSTDSESDS  180
KKEFAVADLP DINNGVYGSD EFRMYCFKIK PCSRAYTHDW TECPFAHPGE NARRRDPKKY  240
QYTCVPCPEF KKGSCKKGEE CEFAHGVFES WLHPAQYRTR LCKDEIGCSR KVCFFAHKRE  300
ELRPVYASTG SAIPDVNVSS SPNGFSGSST PPMSPSYAPL SPNSGASGGA GGMYQGKSSF  360
GVSPPNLQLP GSRLRSSLSA RDMELERELI KIESQFLNQQ HQFQQHQLHQ HQQLQQQQQQ  420
QHQQQQQQQQ QQQQQHQQQV HSPRPSPRWN NNMIPATNLE TAFASINVAR KMSPPSVLES  480
PFNGPRKLSP PRALDSPKSM AAAMLNSRAA AFITRSQSFI DRAASPIGGN MSSPRADWGS  540
PNGKLDWGIH GEELNKLRKS NSFAIRGSNN NATRTSPPGF NEPDVSWVNT LVKDEANAGY  600
LGARSPKYGR GGAGNGVQGQ DMCSPWEQLY IDQEQLVAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689596.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
TrEMBLA0A0K9REK40.0A0A0K9REK4_SPIOL; Uncharacterized protein
STRINGXP_010689596.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-125C3H family protein