PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_023730_qswd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-X1
Protein Properties Length: 876aa    MW: 97937.4 Da    PI: 8.3812
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_023730_qswd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05190208120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG H C  lCH+GpCp+Cp+
  Bv2_023730_qswd.t1 190 CG-HFCLLLCHPGPCPSCPK 208
                         **.***************96 PP
2zf-NF-X124.36.7e-08242261120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+HkC ++CH G+CppC++
  Bv2_023730_qswd.t1 242 CGIHKCVEICHNGECPPCRE 261
                         ******************85 PP
3zf-NF-X117.21.1e-05402421120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+H C + C+ G+CppC++
  Bv2_023730_qswd.t1 402 CGRHACRRRCCDGDCPPCSE 421
                         ******************85 PP
4zf-NF-X118.83.6e-06423448120
            zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                         CG      +HkC ++CH+GpC pCp+
  Bv2_023730_qswd.t1 423 CGrklrcrNHKCPSPCHRGPCAPCPL 448
                         777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.48E-677151No hitNo description
PROSITE patternPS01359078144IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.62478145IPR001841Zinc finger, RING-type
CDDcd060082.35E-5178226No hitNo description
SMARTSM004380.0049190208IPR000967Zinc finger, NF-X1-type
PfamPF014220.0029190207IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-9232280No hitNo description
SMARTSM004381.0E-4242261IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-5242260IPR000967Zinc finger, NF-X1-type
CDDcd060082.87E-7285332No hitNo description
SMARTSM004380.016295314IPR000967Zinc finger, NF-X1-type
PfamPF014221.1295313IPR000967Zinc finger, NF-X1-type
CDDcd060082.78E-9339388No hitNo description
SMARTSM004380.57349369IPR000967Zinc finger, NF-X1-type
PfamPF014220.019349368IPR000967Zinc finger, NF-X1-type
CDDcd060082.14E-7392440No hitNo description
SMARTSM004380.013402421IPR000967Zinc finger, NF-X1-type
PfamPF014228.6E-4402420IPR000967Zinc finger, NF-X1-type
CDDcd060081.01E-11419467No hitNo description
PfamPF014220.0027423447IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0026429448IPR000967Zinc finger, NF-X1-type
SMARTSM0043883486507IPR000967Zinc finger, NF-X1-type
PfamPF0142264496505IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4597630IPR000967Zinc finger, NF-X1-type
PfamPF014220.15597607IPR000967Zinc finger, NF-X1-type
SMARTSM004380.03640658IPR000967Zinc finger, NF-X1-type
PfamPF014220.41640657IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7703724IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MSPTINPPQS LSSDSSDYDS DTSTKSSGHH LRHVDLSNTI FKAYLEINGH DSSSSPQSLD  60
LSKIQTFLNS SSSGALSCLI CLERIKSTDP TWSCNGFCFS VFHLQCIQNW GQQSTALAAS  120
RALTRLPISA QTAADTSVWN CPKCRFEYSK FLIPKNYYCF CGKLENPPHD PWVLPHSCGE  180
ICGRPLKNNC GHFCLLLCHP GPCPSCPKLV KSRCFCGGVH DVKRCGFKEF SCNNECNKVL  240
DCGIHKCVEI CHNGECPPCR EKGVYRCQCG KVKEERECCD RNFRCDNPCG QGLDCGKHVC  300
ERGCHGGVCG QCPLKGKRTC PCEKRVYEGM PCDVVVPLCG DTCDKKLSCG KHRCHERCHR  360
GPCVETCRIM ITKSCRCGCV KKQIPCYQDL ACERKCSRER DCGRHACRRR CCDGDCPPCS  420
EVCGRKLRCR NHKCPSPCHR GPCAPCPLMV TISCACGATR FEVPCGTETE QKPPRCRKPC  480
QIVPLCRHRA IRKPHKCHYG TCPPCGLPCG EEYSCGHVCK LRCHGPVPPP NPEFTLKPKK  540
KKHNHPSEPT AGIPCPPCPE LVWRSCLGQH FAAERMMICS NRAQFSCDNL CGNPLACGNH  600
YCTKTCHALQ NSSSTSDQRT RGAPCDDCTL PCQKERTPVC SHPCPLPCHP GECPSCKVLL  660
KRACHCGAMV HVFECIYYNT LSVKEQLSAR TCGGPCHRKL PNCTHLCPET CHPGPCPSPE  720
KCSKKVTVRC GCHSLKKEWL CHEVQAGYIK SDRDPKDIPR TQYGSGLLPC DSSCKSKAEA  780
RESELLQRKP KAPEKKETED ETHLPKRRKR RERVQETKQA SNLQKLITVI QRYIMFAIIL  840
VALVAVAYYG YKGLLFLNNW MNEVEEHREK RRYRRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1804810PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689644.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0K9RJJ40.0A0A0K9RJJ4_SPIOL; Uncharacterized protein
STRINGXP_010689644.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors