PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_025210_soor.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 275aa    MW: 30470.4 Da    PI: 5.1609
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_025210_soor.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.81.6e-30120173155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv+++e+L G++kA+Pkti+e+m+v+gLt+e+v+SHLQkYRl
  Bv2_025210_soor.t1 120 RPRLVWTPQLHKRFVDVIEHL-GIDKAVPKTIMEMMNVEGLTRENVASHLQKYRL 173
                         59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.636117176IPR017930Myb domain
SuperFamilySSF466891.97E-20117177IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-30119178IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-25121173IPR006447Myb domain, plants
PfamPF002496.1E-8123172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDQSELRLQ GWETGLPLPE DLTPLSQSLI SPELALAFGI NPESSRVQFD LNQATHENCS  60
TICPSEENLE SLSLRLFPGR NDLDISNKLK GGECFVTDEV NSGSKDENGD DNGVNRTVKR  120
PRLVWTPQLH KRFVDVIEHL GIDKAVPKTI MEMMNVEGLT RENVASHLQK YRLYLKRMEG  180
LSSDSHSGSR RDSPLFECDG FGSMAMQHPQ PPQQPPQQQQ QHCGSLPLMP MPMVAPPPGA  240
YGFGHLGLPV ATSAPPGYCG LESGAYSMFW NRQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-32120176157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107252.10.0PREDICTED: transcription factor PCL1
TrEMBLA0A0K9QM921e-129A0A0K9QM92_SPIOL; Uncharacterized protein
STRINGXP_010690987.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.15e-53G2-like family protein