PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_025310_ihqm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 332aa    MW: 37178.4 Da    PI: 5.2814
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_025310_ihqm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.12.3e-3671071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++Cv+apyf  ++  ++fa+vhk+FGasnv++ll +lpe+ r +a+ ++ +eA ar+rdPvyG+vg i +lqq++++l
  Bv2_025310_ihqm.t1   7 SCGACKFLRRKCTSECVFAPYFSYDEaVAHFAAVHKVFGASNVSRLLFHLPEQFRGEAALTISFEAIARMRDPVYGCVGYIYALQQEVANL 97 
                         6***********************9956*************************************************************** PP

              DUF260  91 kaelallkee 100
                         ++e+++l+++
  Bv2_025310_ihqm.t1  98 QEEIEVLGNN 107
                         ****998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.2446108IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-357104IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.25.40.203.7E-19146306IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-18148307IPR020683Ankyrin repeat-containing domain
SMARTSM002481300179208IPR002110Ankyrin repeat
CDDcd002042.66E-15179306No hitNo description
PfamPF127966.5E-11206284IPR020683Ankyrin repeat-containing domain
SMARTSM002489.4218247IPR002110Ankyrin repeat
PROSITE profilePS5029716.228218305IPR020683Ankyrin repeat-containing domain
SMARTSM002480.012261290IPR002110Ankyrin repeat
PROSITE profilePS5008810.953261293IPR002110Ankyrin repeat
SMARTSM002482500295328IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTGVSTSCGA CKFLRRKCTS ECVFAPYFSY DEAVAHFAAV HKVFGASNVS RLLFHLPEQF  60
RGEAALTISF EAIARMRDPV YGCVGYIYAL QQEVANLQEE IEVLGNNIAN NLSIGVASSD  120
CEGSRSQQGG ETSKEIEKIE QLIMERELYE AALEGDMNLF KEAQSKAVDE EYLLQQTTEK  180
NNIIHIAIRR EQYNFIETAL TTLREQVVRK LICAKSCNDD NPLHIAAQVG SMKIAKLLHK  240
CCVELVGDGK NEKPWRTQNS EGNTPLHVAL INGRVEVAKF LFEVDSSLAR ITNQLEETPL  300
HLAVKHQVDG KFPNYLSLFV LEIYELPNNP IM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3131027105LOB family transfactor Ramosa2.1
5ly0_B5e-3131027105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691098.11e-138PREDICTED: alpha-latrotoxin-Lh1a-like
STRINGXP_010691098.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-40LOB domain-containing protein 33