PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_026510_xhwm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 255aa    MW: 29211.7 Da    PI: 6.2445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_026510_xhwm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07753345
                        SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                         WT e d+ +  a +++  +     W + a+ ++ ++t  ++k+++q
  Bv2_026510_xhwm.t1  7 TWTWEQDKAFEIALALYSHDnseeKWVKLASLVPGNKTILEIKHHYQ 53
                        7*****************99**************************9 PP
2Myb_DNA-binding52.21.4e-16102147247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++WT+eE+++++ + +++G+g+Wk+Ia+++ k+R++ q+ s+ qky
  Bv2_026510_xhwm.t1 102 QPWTEEEHKQFLLGMEKYGKGDWKSIAKEFVKTRSATQVASHAQKY 147
                         79*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.61156IPR017877Myb-like domain
SMARTSM007170.0037458IPR001005SANT/Myb domain
SuperFamilySSF466896.21E-8663IPR009057Homeodomain-like
CDDcd001670.00754756No hitNo description
PROSITE profilePS5129418.38296152IPR017930Myb domain
SuperFamilySSF466892.83E-1699151IPR009057Homeodomain-like
SMARTSM007171.4E-13100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-13100152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-15101151IPR006447Myb domain, plants
PfamPF002494.0E-14102147IPR001005SANT/Myb domain
CDDcd001671.54E-9103148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MANSSSTWTW EQDKAFEIAL ALYSHDNSEE KWVKLASLVP GNKTILEIKH HYQILLDDIE  60
AIESGNVALP SYTHTTTPCN ANHSTSPKKR NKESEWEARK GQPWTEEEHK QFLLGMEKYG  120
KGDWKSIAKE FVKTRSATQV ASHAQKYFKR QMKEKKDTKR WSIFDMPAPC SQGDGKSSGS  180
SSSSSINEYT RKEMETKYAT NDTKNQKVVE VQHLNPVINS LEYMSPPESC LVEHDFDIDL  240
EFEMNLQECL SQLPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666611.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN63e-43SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9RJ371e-84A0A0K9RJ37_SPIOL; Uncharacterized protein
STRINGXP_010666611.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-48MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]