PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_026860_cint.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 285aa    MW: 30248.9 Da    PI: 5.9576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_026860_cint.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q
  Bv2_026860_cint.t1   4 SCNGCRVLRKGCSEDCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRMVNPIYGSVGLLWSGQWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q + e++l ++
  Bv2_026860_cint.t1  95 LCQNAIEAVLKGA 107
                         *****99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381556.5E-891275IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9453109IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GQWQLCQNAI EAVLKGAPIT PIPTEAAANP  120
PPIKGAYDIR HVCKDDHSTA ELHRVKPSRN RFKRVGSKSK PTKVAADAAS ALQMMAAASK  180
VTESTRPDSD ELNGAGSSTS HDSTVSHQDE PTSTTDTSLF SNEATVDAAI AAGGDYSDHG  240
GDDGEVELEL TLGFGFDSVG RTESKSGVIS QGNDQGLCGL DLGLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693111.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-85LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9REJ11e-151A0A0K9REJ1_SPIOL; Uncharacterized protein
STRINGXP_010693111.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-77LOB domain-containing protein 41