PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_027660_ihfg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 199aa    MW: 22638.8 Da    PI: 8.8584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_027660_ihfg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed++lvd++k++G g+W++ ++  g+ R++k+c++rw +yl
  Bv2_027660_ihfg.t1 13 KGAWSKQEDQKLVDYIKLHGEGCWHSLPKAAGLDRCGKSCRLRWINYL 60
                        79********************************************97 PP
2Myb_DNA-binding51.72.1e-1666110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Bv2_027660_ihfg.t1  66 RGNFAQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                         8999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-23463IPR009057Homeodomain-like
PROSITE profilePS5129416.227860IPR017930Myb domain
SuperFamilySSF466899.73E-2910107IPR009057Homeodomain-like
SMARTSM007174.1E-141262IPR001005SANT/Myb domain
PfamPF002491.8E-151360IPR001005SANT/Myb domain
CDDcd001677.67E-111560No hitNo description
PROSITE profilePS5129425.84161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-2664116IPR009057Homeodomain-like
SMARTSM007176.8E-1565113IPR001005SANT/Myb domain
PfamPF002499.7E-1566110IPR001005SANT/Myb domain
CDDcd001672.39E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRKPCCNQDG RNKGAWSKQE DQKLVDYIKL HGEGCWHSLP KAAGLDRCGK SCRLRWINYL  60
KPDVKRGNFA QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLICEGI  120
DPNNHKLCHH HLSHPQMFPI TNSSESKKND SCSSKPPSKP CGNNARDING KYENGAITCV  180
EEETSSMLDL NLKLTIHMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131157108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693797.11e-147PREDICTED: transcription repressor MYB6-like isoform X2
RefseqXP_010693801.11e-147PREDICTED: transcription repressor MYB6-like isoform X2
RefseqXP_019107766.11e-147PREDICTED: transcription repressor MYB6-like isoform X2
SwissprotQ388516e-73MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A218XL101e-88A0A218XL10_PUNGR; Uncharacterized protein
STRINGXP_010693797.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-72myb domain protein 6