PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_027790_rdja.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 333aa    MW: 36664.5 Da    PI: 5.953
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_027790_rdja.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09236279755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L++l+P+ +      K++ +++LekA+ Y+k Lq
  Bv2_027790_rdja.t1 236 IAAKNRRERISERLKILQDLVPNgC------KVDLVTMLEKAIGYVKFLQ 279
                         5679*******************77......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.043229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-11230286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-10231283No hitNo description
SuperFamilySSF474592.09E-12232287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6237279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLEAGSSLQF PHISPYNYSF DDFNQKQDGD SLESPNSNNK MISNNQVLSS SPPLSSSSSA  60
TSSNNGFVIH HPQASNYQPH EEAHSLINFK AGYDSFMHSG GSLLSFQQEE QTTYSNDHHH  120
FPIWEGSSSS SMSHDHLKIM KNCNSNMRLL EEVNCLQTSS GGGGGGGGYQ DEANEWLYVE  180
ATDDLPQENG TQQTCFNKRP RMEEENMQIS KKQCTNGASK KPAKIKSSIS KDPQSIAAKN  240
RRERISERLK ILQDLVPNGC KVDLVTMLEK AIGYVKFLQL QVKVLATDEF WPVAGGKAPD  300
ISQVREAIDA ILSSQRSEPA TTTTTTTTTT TTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693889.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A2C9WBV66e-85A0A2C9WBV6_MANES; Uncharacterized protein
STRINGXP_010693889.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.14e-52RHD SIX-LIKE 1