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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Bv2_028110_zsrh.t2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 108aa MW: 12479.4 Da PI: 8.9431 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey+s
Bv2_028110_zsrh.t2 9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAS 59
79***********************************************86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.18E-42 | 2 | 80 | No hit | No description |
| SuperFamily | SSF55455 | 1.31E-34 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 108 aa Download sequence Send to blast |
MGRGKVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYAST 60 DSSMERILER YERYCYAERQ LVATDSEGQQ EIVSHLLCHH CKLQQPFS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 2e-24 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
| 6byy_B | 2e-24 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
| 6byy_C | 2e-24 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
| 6byy_D | 2e-24 | 1 | 85 | 1 | 83 | MEF2 CHIMERA |
| 6c9l_A | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-24 | 1 | 85 | 1 | 83 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019103651.1 | 2e-69 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
| Swissprot | D7SMN6 | 8e-49 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
| TrEMBL | A0A0K9QKC7 | 1e-55 | A0A0K9QKC7_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010666772.1 | 3e-58 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69120.1 | 6e-48 | MIKC_MADS family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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