PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_028240_okmj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 306aa    MW: 34065.5 Da    PI: 5.398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_028240_okmj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.54.3e-174392255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eY++ Lq
  Bv2_028240_okmj.t1 43 RSKHSETEQRRRSKINERFQILRDLIPPN----DQKRDKASLLLEVIEYVQFLQ 92
                        899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.3E-2238106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1938105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.5494191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-174196No hitNo description
PfamPF000101.5E-144392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-144797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVRTVKSHHQ EEEDEDAEDV AAGTDTSSHR EGKSAEQKPN SYRSKHSETE QRRRSKINER  60
FQILRDLIPP NDQKRDKASL LLEVIEYVQF LQEKLQVYEG SYQQQVWSQE ATKLIPWRAN  120
HGPVDNFANH SQALKNGFLE ENTAVQSMTT MQGSVESDFS AELAYRDHPV GSVNPIAPFN  180
VPLQPCIHPP SRGILPIENP ASHPHGSSSA EGAVLGTEDR TYERGSSSVS DVYSQGLLKK  240
LTQALQTSGV DLSQADISVQ LDVGKGEPTL EDVDNRSSNN HPMPHTLEVS AKEPYQAAKR  300
FRIGES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694251.10.0PREDICTED: transcription factor BIM2 isoform X2
TrEMBLA0A0K9R0G21e-164A0A0K9R0G2_SPIOL; Uncharacterized protein
STRINGXP_010694243.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-56BES1-interacting Myc-like protein 2