PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_029370_kqsm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 715aa    MW: 78305.2 Da    PI: 7.0272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_029370_kqsm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08285305526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ GtC++Gd C +aHg
  Bv2_029370_kqsm.t1 285 PCPEFRK-GTCRRGDLCEYAHG 305
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.06E-1318139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-1518144IPR020683Ankyrin repeat-containing domain
CDDcd002047.13E-1218138No hitNo description
PfamPF127961.2E-854129IPR020683Ankyrin repeat-containing domain
SMARTSM002482.36090IPR002110Ankyrin repeat
PROSITE profilePS5029716.83960161IPR020683Ankyrin repeat-containing domain
PRINTSPR014153.6E-56176IPR002110Ankyrin repeat
SMARTSM002480.009695127IPR002110Ankyrin repeat
PROSITE profilePS5008812.12995130IPR002110Ankyrin repeat
PRINTSPR014153.6E-5114128IPR002110Ankyrin repeat
SMARTSM003562.2E-5280306IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-6285305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896285307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5313344IPR000571Zinc finger, CCCH-type
SMARTSM0035616315338IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.249315339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MKEPNHTAVE SENCFFNLLE LASNDDVEGF KKILEHDASK ICAVGLWYGR QKGSRQMVLE  60
HRTPLMVAAT YGSLGVLQLI LAQPWVDVNF SGVPDKSTAL HCSASGGAVE ADEVVKLLLE  120
SGADPNAMDV NGLRPFDVIV VPPKLPSKRA SLEYLLAKNA SDNSIIGPKM LVSVGSSSSS  180
SPPLSSSPDN GSSSFPSDSV LSPKIVKPID FSINQPPEKK EYPVDPSLPD IKDSIYATDE  240
FRMFSFKIRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGTCRRGDLC  300
EYAHGVFECW LHPAQYKTRL CKDGTSCNRR VCFFAHTPEE LRPLHVSTGS AVPSPRASAS  360
VTAVMDMAAA MNLYPGSPSS ISAMLPSPFS PQCMSPPTNN CPNHPWSPQQ NVPTLHLPGS  420
NLQSSRLRSS LSARDIPHKD FNMLSNFDAQ HHMLDDHMAS FSQPRSNPSS LIHAVRTKTL  480
APSNLEELFC SEIASSPRYS DHVPAAVFSP THKSVLLNQF QQQQSFLAPI NTSNVYSPKS  540
VDHPLLQASL SVSSPGRMSP RSVEPISPMS ARLSAFALRE KQLQQQQPLR SFSSREFGVK  600
HNSSLVGSPV NSWSNWGSPN GKTDWSVNVG DGEMGRLNRS SSFELGNNGE EPDLSWVQSL  660
VKDSPPELRE KHVTPVSGAI QSAEGLATKA STDSVDYSVV GAWLEHMQLD QLVAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695261.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9QP900.0A0A0K9QP90_SPIOL; Uncharacterized protein
STRINGXP_010695261.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]