PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_029470_yanm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 352aa    MW: 39154.5 Da    PI: 7.9623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_029470_yanm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.45.9e-093454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         C f++r G C yG+rC++ H+
  Bv2_029470_yanm.t1 34 VCTFYQR-GACAYGSRCRYDHV 54
                        5999999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.549128IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001626IPR000571Zinc finger, CCCH-type
PfamPF156635.3E-8658No hitNo description
PROSITE profilePS5010314.072956IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54131158IPR000571Zinc finger, CCCH-type
SMARTSM003560.21132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4136156IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.03E-13188263No hitNo description
Gene3DG3DSA:3.30.40.101.9E-10193258IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.23E-4199258No hitNo description
SMARTSM001843.3E-7200256IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.268200257IPR001841Zinc finger, RING-type
PfamPF000972.7E-7200256IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180223232IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.003286314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295286315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSNRTLCKFF KHGACLKGDH CEYAHDWNAP ANNVCTFYQR GACAYGSRCR YDHVKVSQLP  60
SSASSSSTGY FGTDNPGVTV NGLAPVASVS LELSPLNRQV LPSNKAAWNQ QSGVSDALED  120
DLIAHPRSDR LVDQVMCSFA AAGNCPKGDK CPHIHGDLCP TCGKHCLHPF RPKEREEHSK  180
TCEKMQKHLE ALKRSQEIEC SVCLERVLSK PTGDRKFGLL SECDHPFCVT CIRNWRNSSP  240
SSGMDVNATL RACPICRKLS YFVIPSVLWY FSKEEKDEIV DSYMAKLKSI DCKYFDFGNG  300
TCPFGASCFY KHSYRDGTVE EVALRHLGAA DGETVIAKNI RLADFLRNLR IS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695330.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-161C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0K9QYM60.0A0A0K9QYM6_SPIOL; Uncharacterized protein
STRINGXP_010695330.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-153C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]