PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_030370_nmyr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 216aa    MW: 23913.6 Da    PI: 8.0677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_030370_nmyr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19656155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        kr++lg+f taeeAa+a+++a+  ++g
  Bv2_030370_nmyr.t1  6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkKRVWLGTFETAEEAARAYDQAAILMNG 56
                        59*****999.**********8.....335**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-34664No hitNo description
PfamPF008472.8E-12756IPR001471AP2/ERF domain
PROSITE profilePS5103222.062764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-33765IPR001471AP2/ERF domain
SMARTSM003802.7E-38770IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21765IPR016177DNA-binding domain
PRINTSPR003678.0E-11819IPR001471AP2/ERF domain
PRINTSPR003678.0E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVLPSKKFRG VRQRQWGSWV SEIRHPLLKK RVWLGTFETA EEAARAYDQA AILMNGQNAK  60
TNFPRDQINH SSSTNNGSKS NNANNQETTP FNSTLSEILS AKLKKYCKDP SPSLTCLRLD  120
TDNSHIGVWQ KRAGSCSSSS WVMRVELGKS AIVSKENTTN NNTSILIDEE SSPLSTSSSN  180
SSSLLEAGSE MSEEDKAALQ MIEELLNWNP PPTSFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-187661474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696316.11e-158PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ3E9585e-70SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0K9Q9V01e-105A0A0K9Q9V0_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010696316.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-60ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]