PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031180_wtsp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 278aa    MW: 30386.5 Da    PI: 6.6079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031180_wtsp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022107129123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Bv2_031180_wtsp.t1 107 FSCNYCQRKFYSSQALGGHQNAH 129
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.94E-6104134No hitNo description
PROSITE profilePS5015711.427107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEQIELEPCL SGTSSTISAA QEVLPHTHLY RQLHQHHKAG KEAQLEDQDQ EQETVSQTQI  60
PLDFMISNED SCHEFNAELN LIDCLNVGSS QSSSETPQAS ESEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTIAKRNQ RIGATIAATA AAFGHPYLHQ QHNYSNIASL PLHGSSPNRS  180
LGIQVHSMAH KTPPNMTMSS SGNVYGHHGW LRLPIEQQPA VGKLVTETCT TAGPSSRGGA  240
GRFNIVDEGV TSGGWWSGDS TIKSNSEDST KLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665880.10.0PREDICTED: zinc finger protein 3
TrEMBLA0A0K9QCL91e-158A0A0K9QCL9_SPIOL; Uncharacterized protein
STRINGXP_010665880.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-49C2H2 family protein