PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031250_jcne.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 76aa    MW: 9052.23 Da    PI: 9.4205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031250_jcne.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-052142323
                        ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                        C++C+k F++   L+ H  + H
  Bv2_031250_jcne.t1 21 CNICSKEFKTANGLQFHVHSrH 42
                        *****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.10.110.108.9E-41472IPR001781Zinc finger, LIM-type
SuperFamilySSF576673.13E-52044No hitNo description
PROSITE patternPS0002802142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MSYLVRDDEE DRSDGTRKKI CNICSKEFKT ANGLQFHVHS RHNNYFLCPT CNLVDQNKNR  60
RQFHDSKICK MSRNKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-