PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_032500_ztjx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 376aa    MW: 41624.3 Da    PI: 7.0144
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_032500_ztjx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17257291135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Bv2_032500_ztjx.t1 257 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 291
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-7512347IPR016679Transcription factor, GATA, plant
SMARTSM004014.5E-18251301IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.517251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15255315No hitNo description
Gene3DG3DSA:3.30.50.103.8E-14255289IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.14E-14256303No hitNo description
PfamPF003201.4E-15257291IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEASSASEFA HFQQQKQQFT PDERRLSCDP FIVEDLLDFS NDDNNNVLFD HHNNNVNGTS  60
SSVVVAGSFV HSNSNSDSST VVTPVDSCNS SFSGNNTNDA IFPLPADIGS HFSGELAVPY  120
DDLAELEWLS NFVEESFSSE DLHKFHLIPA MSAMKTRPDE GSETRYYPSE PTRTAATPVS  180
PIFNPEIPVP GKARSKRSRA APCNWASRLL VLAPGASDTG PVTKPTKSSG AKNKKGLNSG  240
GIGPIVEANV VGEVRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS  300
PTFMLTKHSN SHRKVMELRR QKDLMRQQHM QHQHQHQYQQ LIHHNPNNST SMMFDPSNGD  360
DYLIHQHIGP DFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668515.10.0PREDICTED: GATA transcription factor 12
SwissprotP697815e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0K9QTY11e-176A0A0K9QTY1_SPIOL; GATA transcription factor
STRINGXP_010668515.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-88GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]