PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_032530_xysi.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92441.9 Da    PI: 5.86
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_032530_xysi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182178457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Bv2_032530_xysi.t1 21 YVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                        6789****************************************************97 PP
2START1717.8e-541653732205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v s+g  g+
  Bv2_032530_xysi.t1 165 IAEETLTEFLSKATGTAVEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVAEILKDRLSWYRDCRAVDVMNVMSTGngGT 254
                         789*******************************************************.9999999999********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+al++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h+dl+ + +
  Bv2_032530_xysi.t1 255 IELLYMQLYALTTLAPaRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWRV 345
                         ************************************************9888899************************************ PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s++   ++t++a+l+++++
  Bv2_032530_xysi.t1 346 PEVLRPLYESSTLLSQRTTMAALRQLRQ 373
                         ************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4991579IPR001356Homeobox domain
SMARTSM003899.6E-161783IPR001356Homeobox domain
SuperFamilySSF466891.54E-161981IPR009057Homeodomain-like
CDDcd000861.78E-162080No hitNo description
PfamPF000463.2E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182278IPR009057Homeodomain-like
CDDcd146867.42E-672111No hitNo description
PROSITE profilePS5084825.02155370IPR002913START domain
CDDcd088751.73E-75159374No hitNo description
Gene3DG3DSA:3.30.530.201.0E-21163371IPR023393START-like domain
SMARTSM002342.3E-36164374IPR002913START domain
SuperFamilySSF559617.14E-34164374No hitNo description
PfamPF018523.4E-51165373IPR002913START domain
PfamPF086705.1E-51698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MMAVSSACRD ANKMGADAGK YVRYTPEQVE ALERLYHDCP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK ESSRLQGVNR KLTAMNKLLM EENDRLQKQV AHLVYENSYF  120
RQHTPNAATL ATTDNSCESV VTSGQQQATS QRPPKDASPA GLVSIAEETL TEFLSKATGT  180
AVEWIQMPGM KPGPDSIGII AISHGCTGVA ARACGLVSLE PTRVAEILKD RLSWYRDCRA  240
VDVMNVMSTG NGGTIELLYM QLYALTTLAP ARDFWLMRYT SLLEDGSVVI CERSLNNTQN  300
GPSMPSVQHF VRAEILPSGY LIRPCEGGGS IIHIVDHMDL EPWRVPEVLR PLYESSTLLS  360
QRTTMAALRQ LRQISQEISQ PNVTGFGRRP AALRALSQRL SKGFNEAVNG FMDEGWSMMD  420
SDGIDDVTLL VNSSPSKMMG ENQFYSNGFP SVGTAVLCAR ASMLLQNVPP AVLLRFLREH  480
RSEWADSGID AYAAAAVKAA PCTIPVSRTG CVGGQVILPL AHTIENEEFM EVVRLENLGH  540
YREDMFMPGD IFLLQLCSGV DENAVGACAE LVFAPIDASF SDDAPLLPSG FRIIPVDSSK  600
DVSSPKCTLD LTSALEVGPA GNKTLADNSG SGGGKSVMTI AFQFAFEIHL QENVASMARQ  660
YVRSIISSVQ RVASALSPSR FGSLSGSPLS PGTPEAQTLA RWICQSYRCY LGVELLKPSN  720
EGGESILKTL WQHSDAILCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDEQGR  780
KALFTEMPQI MQQGFICLQG GICMSSMGRP ISYERAVAWK VFNDAEDAQC MCFMFINWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668539.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0K9QMP50.0A0A0K9QMP5_SPIOL; Uncharacterized protein
STRINGXP_010668539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]