PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_033000_mtso.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 386aa    MW: 42872.1 Da    PI: 6.9388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_033000_mtso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-08113133526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C+ f+r G C+ Gd+C FaHg
  Bv2_033000_mtso.t1 113 ACPEFRR-GSCRKGDSCEFAHG 133
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.9066097IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263109135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5112135IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6113133IPR000571Zinc finger, CCCH-type
SMARTSM003569.1143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MMMIHRQHPT VEVPPWDPPY EDPTTPIFSP QTNDYFSALR RYLPSSEFDD ESDNESSDLP  60
FDSFTCDNFR MYEFKIRKCA RGRSHDWTEC PYAHPGEKAR RRDPRKYHYS GTACPEFRRG  120
SCRKGDSCEF AHGVFECWLH PARYRTQPCK DGPHCKRRVC FFAHSPDQLR VLPESPTSRL  180
GCDSLIRDSP PGRLGYDSVL RVLPESPPSR LGCIVPESPP SRLGSDSVGF SPTSVFDSFP  240
ESPPMSPSYG CGSVSELASA MRGMQLGKMG MVGARNGCGG GGNVWGVQMG SPRSYMGCGN  300
GMSLPTTPTR GGGAVVRSPT RCSGLGFFDP WEVTIEEEVP MERVESGKDL RARMYARLSK  360
ENSLVSDRVD SVSSGPDFGW VSELVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668905.10.0PREDICTED: zinc finger CCCH domain-containing protein 23
TrEMBLA0A0K9RVW91e-173A0A0K9RVW9_SPIOL; Uncharacterized protein
STRINGXP_010668905.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-91C3H family protein