PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_034090_iqff.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 91aa MW: 10534.5 Da PI: 10.1494

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_034090_iqff.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.5	1.3e-18	1	48	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++led +kyF+lpi A+k+L +c+Tv+K++ R + I+RWP+Rk+ks+ Bv2_034090_iqff.t1 1 MTLEDFAKYFDLPIDVASKQLCLCATVIKKKIRSFKIPRWPYRKVKSI 48 689*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.675	1	69	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-16	1	48	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MTLEDFAKYF DLPIDVASKQ LCLCATVIKK KIRSFKIPRW PYRKVKSIQR KISLLKESLG 60 ANCTAADHQT ELELQMLQRQ LDDILSGRLK P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669343.1	2e-61	PREDICTED: protein RKD5
STRING	XP_010669343.1	9e-61	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-13	RWP-RK domain-containing protein