PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_034240_wzwm.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

WRKY

Protein Properties

Length: 171aa MW: 19796.6 Da PI: 4.8206

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_034240_wzwm.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YYrC+ gCpvkk+ver+++d k+v++tYeg Hnhe Bv2_034240_wzwm.t2 110 VDDGYKWRKYGKKMVKNSPNPRNYYRCAVDGCPVKKRVERDRDDMKYVITTYEGYHNHE 168 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.7E-33	96	170	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-28	103	170	IPR003657	WRKY domain
PROSITE profile	PS50811	32.053	105	170	IPR003657	WRKY domain
SMART	SM00774	6.5E-35	110	169	IPR003657	WRKY domain
Pfam	PF03106	6.9E-24	111	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MTTTTTTTTF SSLESSGSDQ YFEAGADFEV SDFLTFEDWG GFEQQSMGYG EIQNIGYQGN 60 TDQFCTDVGG TSHIQNEEEN YNTESIRNGR DKKDVKERVA FRMKSEIDVV DDGYKWRKYG 120 KKMVKNSPNP RNYYRCAVDG CPVKKRVERD RDDMKYVITT YEGYHNHETP R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-26	98	170	2	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669354.1	1e-127	PREDICTED: probable WRKY transcription factor 50 isoform X1
Swissprot	Q8VWQ5	2e-39	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A0K9R690	1e-71	A0A0K9R690_SPIOL; Uncharacterized protein
STRING	XP_010669354.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-41	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]