PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_035370_gsnt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 78aa    MW: 9229.1 Da    PI: 5.8828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_035370_gsnt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131059148
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                        r +WT+e d+ +  a +++ ++   +W+ Ia+++  g++ +++k r+q++l
  Bv2_035370_gsnt.t1 10 RSSWTQEQDKAFESALNKYEKDtpdRWHNIAKEVR-GKSVEEVKRRYQDLL 59
                        789********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.374559IPR017877Myb-like domain
SMARTSM007176.0E-12961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-8960IPR009057Homeodomain-like
PfamPF002499.5E-121059IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-151165IPR009057Homeodomain-like
CDDcd001674.47E-91259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MERNSANGSR SSWTQEQDKA FESALNKYEK DTPDRWHNIA KEVRGKSVEE VKRRYQDLLD  60
DVNNIELGRV PFPYNWAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-21573371RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847620.12e-27protein RADIALIS-like 2
SwissprotQ1A1731e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0K9S0L13e-30A0A0K9S0L1_SPIOL; Uncharacterized protein
STRINGXP_010690880.12e-26(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-27RAD-like 6