PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_036110_cjmz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 456aa    MW: 48387.9 Da    PI: 8.0723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_036110_cjmz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.3e-12427226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k e+Cr+f+r G C++GdrCkF H+
  Bv2_036110_cjmz.t1  4 KKEPCRNFQR-GNCRFGDRCKFLHV 27
                        89********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.873229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.41E-5329IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7328IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPLKKEPCRN FQRGNCRFGD RCKFLHVTQQ QPKSNVFGFG SQTATPFQQQ KPNPFGFGVQ  60
NSGPTSGAPF SGGHGQFNSS KPFENKWTRS EQPTNQSQAA SHNCTDPDSC KRQFVEDYQH  120
ERPLWKLTCY GHYKYLPCDI TGDISFEELR AVAYDDAKRG TSLPSIVERE RSLVNSKSSE  180
YDKLLQNPYT KNATPPAQLN QSPFPALNVN SPSPTPQNIG PSLFSTSSQQ NPSPNLSFGV  240
RPSTPPNSGF GQFQGHPGPA GSNISPSGSF GTQAPTQTGG SLLAGNVGGF GNSGMNSQGF  300
GNSGMNIQGF GNSGMNSQGF GNSGMNSPGT HFPAQTGGTT FTPSAGSVSN IGVSSQAPQV  360
SVQTSGVPNA SFVGGFAMHS QGSQLPSTSS VSLHTQTSAV NNSSTLFNGL SGPNGVQQTI  420
DNNPQEASAT DASIWLKEEW KLGEIPEQPP PEAYVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669635.10.0PREDICTED: zinc finger CCCH domain-containing protein 16
TrEMBLA0A0K9RP590.0A0A0K9RP59_SPIOL; Uncharacterized protein
STRINGXP_010669635.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.17e-75C3H family protein