PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_036490_onjn.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 335aa MW: 38836.6 Da PI: 8.8602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_036490_onjn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.4	3.6e-11	12	114	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrng...eitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwe 77 +Y+++Ak+ GF +++++s+ ++++g + + t++C ++gk+++++k+ + + +++++++C a++ + ++ g+w+ Bv2_036490_onjn.t1 12 CYRKFAKQEGFGIVRAASSFNSKSGverKRRSGTWTCECYGKPDNRRKRvnservvvtdsiECANVVVKKTKKCECPANIYASINECGEWV 102 7***********99988876655111445568*********998888888776655555559999**************** PP FAR1 78 vtkleleH.nHe 88 +++++leH nH+ Bv2_036490_onjn.t1 103 LKRVVLEHkNHD 114 ******7785 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-9	12	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-32	239	328	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAFPSWDGVE SCYRKFAKQE GFGIVRAASS FNSKSGVERK RRSGTWTCEC YGKPDNRRKR 60 VNSERVVVTD SIECANVVVK KTKKCECPAN IYASINECGE WVLKRVVLEH KNHDPKPSKS 120 RHISMYRKEE LYKYVRRKLF NDYNSGVKIP QIHGCLARER NGVENWVVTE RDLRNEVSKV 180 KRLKLKDGDC NAMLEYFNKM MAGNQIFFHM HRVDETNTLK DIMWVDARSR AAYEEFGDVV 240 CFDATYLTNE YELPFCNFVG VNHHGQSILL GCALLSHENT ETFEWLFSTW LSCMGGKAPV 300 GILTDQCAAM RKALLTSMPT ARHRWCLWYN REVLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	59	KRRSGTWTCECYGKPDNRRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682171.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A0K9QUT5	1e-107	A0A0K9QUT5_SPIOL; Uncharacterized protein
STRING	XP_010669724.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-48	FAR1 family protein