PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_036550_qhra.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 237aa    MW: 25287.3 Da    PI: 6.4941
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_036550_qhra.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42591581100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk+FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+
  Bv2_036550_qhra.t1  59 PCAACKILRRRCADKCVLAPYFPPTDPLKFTIAHKVFGASNIIKLLQDLPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVSDLQ 149
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         aela+ ++e
  Bv2_036550_qhra.t1 150 AELAKSRAE 158
                         ****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.25658159IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-4259155IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESNYSSDKM MYSSPGATST PPPGSPQSPN SPPSGHGHGY GHGHGHGHGV GGAPVIMSPC  60
AACKILRRRC ADKCVLAPYF PPTDPLKFTI AHKVFGASNI IKLLQDLPES QRADAVSSMV  120
YEANARLRDP VYGCAGAICQ LQKQVSDLQA ELAKSRAEIV NMQCQQANLL ALICMEMTTQ  180
SQDHAMIPVS ASSPQSGGSS DSGAYEIGAN NSNNNNNFLS FYDDNNSLNS IWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-425816410116LOB family transfactor Ramosa2.1
5ly0_B5e-425816410116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669677.11e-178PREDICTED: LOB domain-containing protein 1
SwissprotQ9SK087e-71LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0K9RV841e-103A0A0K9RV84_SPIOL; Uncharacterized protein
STRINGXP_010669677.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-68LOB domain-containing protein 11