PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_037340_ewqy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 273aa MW: 30629.9 Da PI: 9.0645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_037340_ewqy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	7.9e-06	173	209	11	52
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +R +++ ++++ L+el+ + +K + a++L++A+ YIk Bv2_037340_ewqy.t1 173 KRSQKLSDKISALQELVSPY-----GKTDTASVLQEACIYIK 209 6899************99.....9*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.88	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-8	173	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-6	177	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKSSNFMSIS CLQNHNHGGF DGLQSINSEF SMMGNNMNNN GYLGTGIENY YMEQLGYGSM 60 DVSSQLSYVS PVSYSSLMPM PMENLELASP PHLVDYRWSS PCDDFIKNDI LLAQPYKPTI 120 KDVRKCVTGA KLAQRNSVFS NMASLEGSRT SKKRKVIEQF VDTRKFKMQA PVKRSQKLSD 180 KISALQELVS PYGKTDTASV LQEACIYIKI IHQEIRRLSI SYFEGDAERQ SDLQSKGLCL 240 VPVSIMKSIT RESWGGAGDH HTASRTSRRS TYI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669842.1	0.0	PREDICTED: uncharacterized protein LOC104886971 isoform X2
STRING	XP_010669841.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-22	bHLH family protein