PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_037530_amof.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 127aa    MW: 14706.8 Da    PI: 9.7602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_037530_amof.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-054263223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        kCp C+k F+++  L  H++ H
  Bv2_037530_amof.t1 42 KCPFCDKKFRNSQALGGHQNAH 63
                        7******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.5334168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-54267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.33E-64269No hitNo description
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MMKNARIPQG EDSGKKLRLF GFDLQFNADN NATNEQIQGK RKCPFCDKKF RNSQALGGHQ  60
NAHKKERLMK RRSQLQEKKA SIEFYLRSLD HQSTFLVYEP QLLFNPMPSR DGCDGSDPCP  120
IHIYAPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021741340.16e-49zinc finger protein 5-like
TrEMBLA0A0K9QEH67e-39A0A0K9QEH6_SPIOL; Uncharacterized protein
STRINGXP_004297672.12e-16(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-12C2H2 family protein