PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_042510_dwuo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 406aa MW: 45708.5 Da PI: 5.2929

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_042510_dwuo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	109	167	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +++eLe+kvk+L++e +aL +l+ k l+se+ Bv2_042510_dwuo.t1 109 KRAKRILANRQSAARSKERKARYMQELEKKVKSLQTEATALSVQLSLFKRDTTGLTSEN 167 9********************************************99999988888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-15	105	169	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	107	170	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-8	109	166	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.43E-10	109	160	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-8	109	180	No hit	No description
CDD	cd14703	5.52E-21	110	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MGHRRVHSEI FLRFPDEISF GGSMEGGDDA NDILATYMDM EKIDNFGENG NQPVKLNHNQ 60 KLRHCFSVDE FSGFSSNNQN DQNIGLPSCE AKKAMPPNKL AELWIVDPKR AKRILANRQS 120 AARSKERKAR YMQELEKKVK SLQTEATALS VQLSLFKRDT TGLTSENIEL RRELESMEQQ 180 AHLRDALNDA LKQELDRLKI ATGDTLVPAD AFAMPLHSIP CHLEQQQQPS PSPFESNMLS 240 ISHAPPALDS VQRQMPVICP PEMNFHTSHQ PVVDPPIEAN SSQKLCSFEA NMLNSAQEPK 300 FCTELYLPLE SCKPRMSQFG STEANMNYVP QPMDSPLGHL PPYHFESQTQ SPEQEIYNMT 360 SQSHMQMPKQ DNISQFQGLD INAFDSYQLV KVEGPSIIAN ESMGGF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MGHRRVHSEI FLRFPDEISF GGSMEGGDDA NDILATYMDM EKIDNFGENG NQPVKLNHNQ  60
KLRHCFSVDE FSGFSSNNQN DQNIGLPSCE AKKAMPPNKL AELWIVDPKR AKRILANRQS  120
AARSKERKAR YMQELEKKVK SLQTEATALS VQLSLFKRDT TGLTSENIEL RRELESMEQQ  180
AHLRDALNDA LKQELDRLKI ATGDTLVPAD AFAMPLHSIP CHLEQQQQPS PSPFESNMLS  240
ISHAPPALDS VQRQMPVICP PEMNFHTSHQ PVVDPPIEAN SSQKLCSFEA NMLNSAQEPK  300
FCTELYLPLE SCKPRMSQFG STEANMNYVP QPMDSPLGHL PPYHFESQTQ SPEQEIYNMT  360
SQSHMQMPKQ DNISQFQGLD INAFDSYQLV KVEGPSIIAN ESMGGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670608.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	2e-65	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A0K9RLX0	1e-144	A0A0K9RLX0_SPIOL; Uncharacterized protein
STRING	XP_010670608.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-67	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]