PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_043000_wkhc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CPP
Protein Properties Length: 857aa    MW: 93246.9 Da    PI: 8.1075
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_043000_wkhc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.2e-16458497241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+CnCkk+kClk+YC+Cfaag +C+e+C C++C+N+ e
  Bv2_043000_wkhc.t1 458 TTKRCNCKKTKCLKLYCDCFAAGFYCGESCACQGCFNRPE 497
                         5799*********************************876 PP
2TCR50.15.3e-16545582138
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
                         ++k+gCnCkks ClkkYCeC++a++ Cse C+Ce+CkN
  Bv2_043000_wkhc.t1 545 RHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKN 582
                         589**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-15457498IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.39458585IPR005172CRC domain
PfamPF036383.8E-12460495IPR005172CRC domain
SMARTSM011141.5E-16545586IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-11547582IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MDTPESKSTP ANNTKIKLIN PTSSDSSAFQ DSPVFNYISN LSPIQPVKAG PVSQGFPELA  60
SPPLVFTSPR ITSLHSFGNR KIRSSGSNSE FSQDHDNCQR NERDLGHSMK VVPEFRSPLV  120
PSDQKTCNTE KLVSVAHCSP SGCFDDYLGD PGQSANFTHK MQSDNAPPSA KGGCLKKIGV  180
VDGRDMGPFC SASQKGRDSA QPRSRISVKL VKNESRHMTS LSECSGALPR LLTDHISQSG  240
DSFSEASQLE RGTLRRCLFD ESQRKNSADQ FGFSNPIVNA QIQESANMSY GKSGNRHMIN  300
LSKPAIDASV SPGNYPVVIS KSLGIGLHLN SVVYSGSTDS AIGSQQSSMV SVEGNSSPQI  360
TNNQSDGKIN ASNIVGISSA SREEIDQHQA HLVPAYDTTI APDLDEQFNT AIDAKLDPCS  420
TITNDKRKSS PDLDENDSSL GSPKKTRKKA STSTDDDTTK RCNCKKTKCL KLYCDCFAAG  480
FYCGESCACQ GCFNRPEYED TVLETRQQIE SRNPLAFAPK VMQTVTASPT TGKVVEKLST  540
PSSARHKRGC NCKKSMCLKK YCECYQANVG CSEGCRCEGC KNIYGVREDY SIAREIMLKR  600
ASVEMSEGTI TVNGNVVSSR VHSSPSMTPI TPALQCSDQR KTAPKSRPPF RRFLRSPDLR  660
HDVLTTEDNL ASPRNLQNQS VLLETSKCLD EGALNMEKGS EYTEDRSVSA GDESIYAACS  720
SQSSNTDAKH RNLRNISQPE SFAQSDPPPP SSSLRWRSSP ITPITHLVTS ELNDLGTGSK  780
HCDMFEDDTP EILKHSSTPV KSVKISSPNK KRVSPPHNYM NSSESLKSSR KFVLRAVPSF  840
PPLTPYSGNS SNDNRGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1846258314121Protein lin-54 homolog
5fd3_B9e-1846258314121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3740590.0DQ374059.1 Beta vulgaris chromosome 9 clone BAC132 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670664.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
RefseqXP_010670665.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A0K9QHI40.0A0A0K9QHI4_SPIOL; Uncharacterized protein
STRINGXP_010670664.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-43TESMIN/TSO1-like CXC 2