PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_045040_iqrn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 383aa    MW: 41702.1 Da    PI: 6.5775
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_045040_iqrn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.6e-08941436
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                        + C+ +++  +++fC+ +  +lC +C  ++H  
  Bv2_045040_iqrn.t1  9 KLCDSCKSATATIFCRADTAYLCISCDAKIHAA 41
                        68*****************************54 PP
2zf-B_box279e-095196342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         ++C+ +e+ +++  C+ +  +lC++C   +H+       H++vpl
  Bv2_045040_iqrn.t1 51 VWVCEVCEHAPATVTCKADAAHLCATCDRDIHSAnplarrHERVPL 96
                        689*****************************66899999*99986 PP
3CCT70.25.3e-24313356144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Bv2_045040_iqrn.t1 313 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.537653IPR000315B-box-type zinc finger
SMARTSM003361.6E-11653IPR000315B-box-type zinc finger
PfamPF006431.6E-5948IPR000315B-box-type zinc finger
CDDcd000212.31E-71053No hitNo description
PROSITE profilePS5011910.7794996IPR000315B-box-type zinc finger
PfamPF006439.3E-75196IPR000315B-box-type zinc finger
CDDcd000215.65E-95296No hitNo description
SMARTSM003361.9E-95496IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787313355IPR010402CCT domain
PfamPF062035.9E-18313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGGGLMAAKL CDSCKSATAT IFCRADTAYL CISCDAKIHA ANKLASRHAR VWVCEVCEHA  60
PATVTCKADA AHLCATCDRD IHSANPLARR HERVPLTPFY DPLSPPNTTN NNNDDSDSSA  120
TAAAAAKSAA INKLFGDEYY SDADEAEAAS WLLPNPNKTD EPKSIDYLFS SSGNDGDDID  180
PYLDLDFGAE AKPDPDLSSD GVVPDPDQKG VHHHHLTTLQ HPAASMFSLS SYHHHHHHHH  240
VSNNNGHFDG FENSSAACKP FALSSYHTQP SLSHSVSSSS LDFGVVPDAS NITDVASTGF  300
DKQQQMKIIG MDREARVLRY REKRKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDVEA  360
EVSAASVDGL FAPDPGYGVV PTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4377830.0EU437783.1 Beta vulgaris subsp. vulgaris COL2 (COL2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692981.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T97e-95COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0J8E8B40.0A0A0J8E8B4_BETVU; Uncharacterized protein
STRINGXP_010692981.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.17e-67B-box type zinc finger protein with CCT domain