PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_045840_qtyg.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family AP2
Protein Properties Length: 470aa    MW: 50888.7 Da    PI: 8.5408
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_045840_qtyg.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17148197155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Bv2_045840_qtyg.t2 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9148197IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15148205IPR016177DNA-binding domain
SMARTSM003805.0E-32149211IPR001471AP2/ERF domain
CDDcd000183.88E-11149207No hitNo description
Gene3DG3DSA:3.30.730.101.1E-16149205IPR001471AP2/ERF domain
PROSITE profilePS5103217.82149205IPR001471AP2/ERF domain
CDDcd000188.37E-12240285No hitNo description
SuperFamilySSF541714.51E-6240284IPR016177DNA-binding domain
SMARTSM003803.8E-12241289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MKDEEGSATN TELSGTSSAS SLVNAGADES PISGTGEYDF FSKPPRYEDN ISPFITRQLF  60
PMNDENDNNG QKMSVSIASN YGDGNRDMEL LRLGSSSSSS SRSSVNQNQW LNLSVLGSGP  120
GPGVGSDQQN NVKQQVRKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGVDA DINFTIADYE EDMTQMKTLS KEEFVHILRR QSTGFSRGSS  240
RYRGVTLHKC GRWEARMGQF LGKKAYDKAA IQCNGREAVT NFDPSSYEGQ IPIMEANNDG  300
DGKNLDLNLG ISITIDSPQG CNDKGVGGSQ TPHLPLHLAS GKWPVNGSST YLSPGAPPLY  360
GQPLASRQST TTWSGLPPGR SGTYEDKVGD HQKLETMSAA ARLPNWAWYM QNQGQGGSGG  420
GVGGTANQVQ LFSNTAASSG FSSFSTTTGS SAGYPFTNPH NDFHNHGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693092.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X4
TrEMBLA0A0K9QBF40.0A0A0K9QBF4_SPIOL; Uncharacterized protein
STRINGXP_010693088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-78related to AP2.7