PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046210_mrcu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 526aa    MW: 57778.7 Da    PI: 7.3448
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046210_mrcu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11150174226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+Gd+CkF H+
  Bv2_046210_mrcu.t1 150 GEKDCTHYMLTRTCKFGDNCKFDHP 174
                         7889********************8 PP
2zf-CCCH33.47.8e-11200226127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f++t  Ck+G +CkF+H++
  Bv2_046210_mrcu.t1 200 PGEPDCPYFLKTQKCKFGLKCKFNHPK 226
                         5789*********************96 PP
3zf-CCCH36.96e-12250274327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++lC+f+ +tG Ck+G+ CkF+H++
  Bv2_046210_mrcu.t1 250 EPLCSFYTKTGKCKFGAACKFHHPK 274
                         79*********************96 PP
4zf-CCCH38.32.3e-12328351326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         ++ C+f+++tG CkyG++C+++H+
  Bv2_046210_mrcu.t1 328 EVDCPFYLKTGSCKYGANCRYNHP 351
                         789********************9 PP
5zf-CCCH38.32.3e-12418441326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C+++++ G+Ck+G+rCkF+H+
  Bv2_046210_mrcu.t1 418 QIECDYYMKRGECKFGERCKFHHP 441
                         568********************8 PP
6zf-CCCH31.72.6e-10473494627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+f+++tGtC+y  +CkF H+p
  Bv2_046210_mrcu.t1 473 CPFYMKTGTCSYAVNCKFDHPP 494
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-4148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957148176IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9150174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5150175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4154173IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38199227IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8201226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5204229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4205226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666247275IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5247274IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9250274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6250275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-6252273IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525325353IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10328351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5331351IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6415442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366415443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6416444IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10419441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5421441IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4467494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314467495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5470494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4472492IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7473494IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MANQLYNGHQ NSLSNIYNPS TRSAINTTYP AEPPSLLSSS RYLSSFPDPH SLSSDSPSES  60
VRRSLSYSDT HGLTAASRSI VPTATSTSLW PSFDVFSAYR KRPSEALYNH SVLGAHMVGQ  120
NEAWFSSDSL AKRPRFQSAS NLPVYPQRPG EKDCTHYMLT RTCKFGDNCK FDHPIWVPAG  180
GIPDWKEPPA VPSEIYPERP GEPDCPYFLK TQKCKFGLKC KFNHPKDKLI LAQDTSAETD  240
ASDLPERPTE PLCSFYTKTG KCKFGAACKF HHPKDIQVPS DGQEADDEEQ THSIDHLGTT  300
SDGNSLKALT SNPASSYNSK GLPVRMGEVD CPFYLKTGSC KYGANCRYNH PDRNELSSPF  360
SVINPSSAVV GHAVLPALAS VSAGLINPAA SIFQSLQPGL PQTTFGQVPV IYPQRPGQIE  420
CDYYMKRGEC KFGERCKFHH PIDRSAPARN QTLEQNVKFT LAGLPRREGV QHCPFYMKTG  480
TCSYAVNCKF DHPPPGEVMA AAGKETLTKA EEEGKESEEG AATAEK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693153.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-177C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0J8BGV70.0A0A0J8BGV7_BETVU; Uncharacterized protein
STRINGXP_010693153.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-178floral homeotic protein (HUA1)