PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046230_sgnn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NAC
Protein Properties Length: 336aa    MW: 38854.9 Da    PI: 7.8674
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046230_sgnn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.5e-50371663128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv++yLk+kve+++    e+ik++diyk++PwdL  ++ + ++kewyf++kr +ky+++ r+nr+t sg+Wkatg d+++
  Bv2_046230_sgnn.t1  37 PGFRFHPTDEELVSFYLKRKVEKRRPLSIEIIKQIDIYKYDPWDLAkASSSIGDKEWYFYCKRGRKYRNSIRPNRVTGSGFWKATGIDRPI 127
                         9**********************99555599**************844566699************************************* PP

                 NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++   +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Bv2_046230_sgnn.t1 128 YCNegeGNQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 166
                         **97766677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5334200IPR003441NAC domain
PROSITE profilePS5100553.73335200IPR003441NAC domain
PfamPF023657.4E-2537166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEVKRCNSQD DQQERRDSKI SGGGLVDGVD DDEGPLPGFR FHPTDEELVS FYLKRKVEKR  60
RPLSIEIIKQ IDIYKYDPWD LAKASSSIGD KEWYFYCKRG RKYRNSIRPN RVTGSGFWKA  120
TGIDRPIYCN EGEGNQCIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPTDQ HQHDQAANFS  180
KPKDTAPEAE IWTLCRIFKR NKRHTPDWRE LSSRKNAVNS SSKTSSIDSN TNQAYYISFG  240
THEVQPNSSY SHLHVVDDEN NNIYLGNNLN ITTCDQKNVN FQPEYQQQWN SLAHTPSSTT  300
RSSMNNENDL QSFAYYGHNW DDLNSVVEYA VNKPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-443719817166Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693169.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK557e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0J8BD730.0A0A0J8BD73_BETVU; Uncharacterized protein
STRINGXP_010693169.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-76NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]