PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_046350_woho.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 543aa    MW: 60544.4 Da    PI: 7.3653
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_046350_woho.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068403422120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         y C++C+k Fs++  L  H 
  Bv2_046350_woho.t1 403 YICNICNKNFSSRQALGGHR 422
                         89***********9997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-56998No hitNo description
SMARTSM003550.0117294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1157299IPR007087Zinc finger, C2H2
PfamPF139120.00127296IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
PROSITE profilePS501578.58403438IPR007087Zinc finger, C2H2
SMARTSM003556.2403424IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-6403422IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995443465IPR007087Zinc finger, C2H2
SMARTSM003550.3443465IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-7443465IPR007087Zinc finger, C2H2
PROSITE patternPS000280445467IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MKDKQEKVFN VRAVKGHVRG HLLHLISPKK SDNMQKNQLG TEDNEHMSDK LREIPTNCFW  60
VSSKAKQKDQ SFVCKQCEKG FKSPRAVFGH MRCHSKRKTG DHVQLCTTNM PRKKRSIGRY  120
KINTSCCSTN SSWSNMKSCS SSLTEFDEKL EDIAASLLML ANGGFYSVDH YVSEDDSVKM  180
EPRFLKCGNK MDLMGVCNDD HGTEGVLTAE PGLKFDVQKC GYDEYKEKTQ EFPGSDCGRL  240
KTKPENFECK PVSDAELESE IKDGAIGVFP ADLFDNLDPS TCGPTAEELK NKTVNVFDRV  300
FDSSKPTAGA SALMTNPDYI KTGPTVSLER TSELFESEIK DETSGVYKAD TKVNSLNPTN  360
CDPLVLESKH ERIGLTDQAF DKCNSGTSGQ ATDNCCSNQC QKYICNICNK NFSSRQALGG  420
HRLHCPLEKR FCHTQGNKKT WKHKCLVCCK AFPSGQALGG HMRAHFHANV QCNKTEFVAC  480
GKEISAATEE EKKELSDAYD DTIPAAAIEE RKLENEACSN KIQQLFKEKE MTIIPQGNIP  540
LSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195114KRKTGDHVQLCTTNMPRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693203.20.0PREDICTED: uncharacterized protein LOC104906182
TrEMBLA0A0J8BEC50.0A0A0J8BEC5_BETVU; Uncharacterized protein
STRINGXP_010693203.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-11C2H2 family protein