PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_046950_hasi.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 324aa MW: 37335.9 Da PI: 6.0069

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_046950_hasi.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	4e-56	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv ++++++ +i e+d++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Bv2_046950_hasi.t1 18 LPPGFRFHPTDEELITHYLSEKVLDRNFST-IAIGEADLNKIEPWDLPRQAKMGEKEWYFFVVRDRKYPTGLRTNRATEAGYWKATGKDKE 107 79***********************999.88***********99999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ ++lvg+kktLvfy+grapkgekt+Wvmheyrle Bv2_046950_hasi.t1 108 IYR-AKTLVGMKKTLVFYTGRAPKGEKTNWVMHEYRLE 144 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-62	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	58.216	18	169	IPR003441	NAC domain
Pfam	PF02365	1.9E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEMDSYSTIS REDEQMELPP GFRFHPTDEE LITHYLSEKV LDRNFSTIAI GEADLNKIEP 60 WDLPRQAKMG EKEWYFFVVR DRKYPTGLRT NRATEAGYWK ATGKDKEIYR AKTLVGMKKT 120 LVFYTGRAPK GEKTNWVMHE YRLEGKHSKY NFSNKNSKND WVISRVFNKS SGAKKPNFDE 180 LVRLEELQPS LLPPLMDSSP YNNSETKAMS MTPNSSHDVT CFSNPYVVEN QLKATTTKQE 240 ELGMFGTTPC SSPLLLSSKP SFSNMLSEQD FSNFKFDDSL FSQDQSMLKL LLEGKGSNSN 300 SISNHEIINN LTGPFDQQDF FWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-57	15	175	17	174	NAC domain-containing protein 19
3swm_B	2e-57	15	175	17	174	NAC domain-containing protein 19
3swm_C	2e-57	15	175	17	174	NAC domain-containing protein 19
3swm_D	2e-57	15	175	17	174	NAC domain-containing protein 19
3swp_A	2e-57	15	175	17	174	NAC domain-containing protein 19
3swp_B	2e-57	15	175	17	174	NAC domain-containing protein 19
3swp_C	2e-57	15	175	17	174	NAC domain-containing protein 19
3swp_D	2e-57	15	175	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693263.1	0.0	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-106	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A314Z7V6	1e-118	A0A314Z7V6_PRUYE; NAC transcription factor NAC4
STRING	XP_010693263.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	9e-93	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]