PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_048700_sktd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 295aa    MW: 33514 Da    PI: 5.2796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_048700_sktd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-11159202654
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            E+rRR+ri ++++ L  l+P++      K + a+iL  A++YIk L
  Bv3_048700_sktd.t1 159 RDSEQRRRKRISDKLQVLDNLVPHS-----HKRDHATILDNATKYIKTL 202
                         678*********************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.843153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-10154204No hitNo description
PfamPF000101.4E-8158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-13159225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-9159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12159215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSCFKCGTSS GNVNASSFSG FNITSNMQAA LTDQVDVAIN DTTSAEDFDA LHDWMDNQLA  60
DLAKHDHNDV DGYLSLQDNN KDTVSQDVTG LDFQISSLHD SDDDHHDDHT MDHNFIREVE  120
LRNVDFDTSK GRQLFEPEQT SPLDEDQQGA TCWKVSKKRD SEQRRRKRIS DKLQVLDNLV  180
PHSHKRDHAT ILDNATKYIK TLKNHIGMML GWQRQSQLQQ ASYATQTFVP MMMTDMQFGA  240
VNSSGITRAQ PIYQMPISPT LYQQQPPNFY HPSTTASFEQ PTFCPPTTRQ LPPHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670990.10.0PREDICTED: transcription factor HFR1 isoform X1
STRINGXP_010670990.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-10phytochrome interacting factor 3-like 5